PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041864m
Common NameCISIN_1g041864mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 301aa    MW: 33316.2 Da    PI: 5.6652
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041864mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.11.1e-20111208195
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k+l++sdv++++r++lpkk ae+h   ++++e++ +++ed++g  +W++k+++  +++s++yvl+ ++ +Fv+a+gL+ gDf++ +  ++
  orange1.1g041864m 111 FQKELKNSDVSSLRRMILPKKAAEAHlpVLESKEGIFISMEDLDGlHVWTFKYRFwpNNNSRMYVLE-NTGDFVNAHGLQLGDFIIVYK-DD 200
                        99**************************555668899********9*******9989999999***9.******************993.33 PP

                        SEE..EEE CS
                 B3  88 sefelvvk 95 
                        +++++v++
  orange1.1g041864m 201 QNQNYVIQ 208
                        66666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-28104218IPR015300DNA-binding pseudobarrel domain
CDDcd100175.17E-28109211No hitNo description
SuperFamilySSF1019361.12E-22109208IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.5E-21111213IPR003340B3 DNA binding domain
PfamPF023622.3E-17111209IPR003340B3 DNA binding domain
PROSITE profilePS5086310.123111213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMDQGVVVHE KNEARAFMAG VEGVTAKGDK STRFGSDPIR ASGSSLDLVA AVTSALGANI  60
NRKKRMARQR RSSSFNLLAF SSPSSSSTSH VSPPLALPAR EIDPGRLRFL FQKELKNSDV  120
SSLRRMILPK KAAEAHLPVL ESKEGIFISM EDLDGLHVWT FKYRFWPNNN SRMYVLENTG  180
DFVNAHGLQL GDFIIVYKDD QNQNYVIQAK KASDQDVYTN LTSDSVNDIL LNDYEVNRSG  240
SFYVNHPMAG EDTGMSFIYD TTTFSNDSPL DFLGGSLTSY SRIGQESFGS VENISLDDFY  300
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.29390.0callus
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446963.10.0hypothetical protein CICLE_v10016085mg
SwissprotQ9LW312e-99FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLA0A067E8060.0A0A067E806_CITSI; Uncharacterized protein
STRINGPOPTR_0001s32990.11e-132(Populus trichocarpa)
STRINGPOPTR_0017s08820.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71382638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-94B3 family protein